3HB8 image
Deposition Date 2009-05-04
Release Date 2010-05-26
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3HB8
Keywords:
Title:
Structures of Thymidylate Synthase R163K with Substrates and Inhibitors Show Subunit Asymmetry
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.74 Å
R-Value Free:
0.26
R-Value Work:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Thymidylate synthase
Gene (Uniprot):TYMS
Mutations:R163K
Chain IDs:A, B, C, D, E
Chain Length:313
Number of Molecules:5
Biological Source:Homo sapiens
Primary Citation
Structures of human thymidylate synthase R163K with dUMP, FdUMP and glutathione show asymmetric ligand binding.
Acta Crystallogr.,Sect.D 67 60 66 (2011)
PMID: 21206062 DOI: 10.1107/S0907444910044732

Abstact

Thymidylate synthase (TS) is a well validated target in cancer chemotherapy. Here, a new crystal form of the R163K variant of human TS (hTS) with five subunits per asymmetric part of the unit cell, all with loop 181-197 in the active conformation, is reported. This form allows binding studies by soaking crystals in artificial mother liquors containing ligands that bind in the active site. Using this approach, crystal structures of hTS complexes with FdUMP and dUMP were obtained, indicating that this form should facilitate high-throughput analysis of hTS complexes with drug candidates. Crystal soaking experiments using oxidized glutathione revealed that hTS binds this ligand. Interestingly, the two types of binding observed are both asymmetric. In one subunit of the physiological dimer covalent modification of the catalytic nucleophile Cys195 takes place, while in another dimer a noncovalent adduct with reduced glutathione is formed in one of the active sites.

Legend

Protein

Chemical

Disease

Primary Citation of related structures