ISDA

Deposition Date 2009-04-30

Release Date 2009-08-25

Last Version Date 2024-10-30

Entry Detail

PDB ID:

3H9O

Keywords:

TRANSFERASE

Title:

Phosphoinositide-dependent protein kinase 1 (PDK-1) in complex with compound 9

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.30 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.21

Space Group:

P 32 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:3-phosphoinositide-dependent protein kinase 1
Gene (Uniprot):PDPK1
Chain IDs:A
Chain Length:311
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O15530 Pfam ID:PF00069 EC:2.7.11.1

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
SEP	A	SER	PHOSPHOSERINE

Ligand Molecules

9BD

Primary Citation

Benzo[c][2,7]naphthyridines as inhibitors of PDK-1

Kim, K.H, Wissner, A, Floyd, M.B, Fraser, H.L, Wang, Y.D, Dushin, R.G, Hu, Y, Olland, A, Guo, B, Arndt, K.Show

Bioorg.Med.Chem.Lett. 19 5225 5228 (2009)

PMID: 19628388 DOI: 10.1016/j.bmcl.2009.07.007

Abstact

A series of substituted benzo[c][2,7]-naphthyridines were prepared and showed good potency in inhibiting PDK-1. The synthesis and SAR of this series of compounds are presented as well as the X-ray crystal structure of one of these analogs in a complex with PDK-1.

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Protein

Chemical

Disease

Primary Citation of related structures