3H8H image
Deposition Date 2009-04-29
Release Date 2009-06-23
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3H8H
Keywords:
Title:
Structure of the C-terminal domain of human RNF2/RING1B;
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase RING2
Gene (Uniprot):RNF2
Chain IDs:A
Chain Length:112
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Ring1B contains a ubiquitin-like docking module for interaction with Cbx proteins.
Biochemistry 48 10542 10548 (2009)
PMID: 19791798 DOI: 10.1021/bi901131u

Abstact

Polycomb group (PcG) proteins are a special set of repressive transcription factors involved in epigenetic modifications of chromatin. They form two functionally distinct groups of catalytically active complexes: Polycomb repressive complex 1 (PRC1) and 2 (PRC2). The PRC1 complex is an important yet poorly characterized multiprotein histone ubiquitylation machine responsible for maintaining transcriptionally silent states of genes through histone H2A K119 modification. The Ring domain containing subunits of PRC1 also have substrate-targeting domains that interact with Cbx proteins, which have been implicated in chromatin and RNA binding. In this work, we present a high resolution structure of the C-terminal domain of Ring1B, revealing a variant ubiquitin-like fold with a distinct conserved surface region. On the basis of crystal structure and mutational analysis of this domain we show that the conserved surface is responsible for interaction with Cbx members of the PRC1 and homodimer formation. These data suggest a mechanism by which Ring1B serves as an adaptor that mediates binding between the members of the PRC1 complex and the nucleosome.

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