3H86 image
Deposition Date 2009-04-28
Release Date 2009-10-06
Last Version Date 2023-11-29
Entry Detail
PDB ID:
3H86
Keywords:
Title:
Crystal structure of adenylate kinase from Methanococcus maripaludis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Adenylate kinase
Gene (Uniprot):adkA
Chain IDs:A (auth: B), B (auth: A), C, D (auth: G)
Chain Length:192
Number of Molecules:4
Biological Source:Methanococcus maripaludis
Ligand Molecules
Primary Citation
Crystal structure of a trimeric archaeal adenylate kinase from the mesophile Methanococcus maripaludis with an unusually broad functional range and thermal stability.
Proteins 78 357 364 (2009)
PMID: 19731371 DOI: 10.1002/prot.22549

Abstact

The structure of the trimeric adenylate kinase from the Archaebacteria Methanococcus mariplaludis (AK(MAR)) has been solved to 2.5-A resolution and the temperature dependent stability and kinetics of the enzyme measured. The K(M) and V(max) of AK(MAR) exhibit only modest temperature dependence from 30 degrees -60 degrees C. Although M. mariplaludis is a mesophile with a maximum growth temperature of 43 degrees C, AK(MAR) has a very broad functional range and stability (T(m) = 74.0 degrees C) that are more consistent with a thermophilic enzyme with high thermostability and exceptional activity over a wide range of temperatures, suggesting that this microbe may have only recently invaded a mesophilic niche and has yet to fully adapt. A comparison of the Local Structural Entropy (LSE) for AK(MAR) to the related adenylate kinases from the mesophile Methanococcus voltae and thermophile Methanococcus thermolithotrophicus show that changes in LSE are able to fully account for the intermediate stability of AK(MAR) and highlights a general mechanism for protein adaptation in this class of enzymes.

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Primary Citation of related structures