3H7D image
Deposition Date 2009-04-24
Release Date 2010-04-28
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3H7D
Keywords:
Title:
The crystal structure of the cathepsin K Variant M5 in complex with chondroitin-4-sulfate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.24 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cathepsin K
Gene (Uniprot):CTSK
Mutations:K9E, I171E, Q172S, N190M, K191G, L195K
Chain IDs:A, B (auth: E)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure-activity analysis of cathepsin K/chondroitin 4-sulfate interactions.
J.Biol.Chem. 286 8988 8998 (2011)
PMID: 21193413 DOI: 10.1074/jbc.M110.126706

Abstact

In the presence of oligomeric chondroitin 4-sulfate (C4-S), cathepsin K (catK) forms a specific complex that was shown to be the source of the major collagenolytic activity in bone osteoclasts. C4-S forms multiple contacts with amino acid residues on the backside of the catK molecule that help to facilitate complex formation. As cathepsin L does not exhibit a significant collagenase activity in the presence or in the absence of C4-S, we substituted the C4-S interacting residues in catK with those of cathepsin L. Variants revealed altered collagenolytic activities with the largest inhibitory effect shown by the hexavariant M5. None of the variants showed a reduction in their gelatinolytic and peptidolytic activities when compared with wild-type catK, indicating no structural alteration within their active sites. However, the crystal structure of the M5 variant in the presence of oligomeric C4-S revealed a different binding of chondroitin 4-sulfate. C4-S is not continuously ordered as it is in the wild-type catK·C4-S complex. The orientation and the direction of the hexasaccharide on the catK surface have changed, so that the hexasaccharide is positioned between two symmetry-related molecules. Only one M5 variant molecule of the dimer that is present in the asymmetric unit interacts with C4-S. These substitutions have changed the mode of catK binding to C4-S and, as a result, have likely affected the collagenolytic potential of the variant. The data presented here support our hypothesis that distinct catK/C4-S interactions are necessary for the collagenolytic activity of the enzyme.

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