3H6D image
Deposition Date 2009-04-23
Release Date 2009-11-24
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3H6D
Keywords:
Title:
Structure of the mycobacterium tuberculosis DUTPase D28N mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Deoxyuridine 5'-triphosphate nucleotidohydrolase
Mutations:D28N
Chain IDs:A
Chain Length:174
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Primary Citation
Direct contacts between conserved motifs of different subunits provide major contribution to active site organization in human and mycobacterial dUTPases.
Febs Lett. 584 3047 3054 (2010)
PMID: 20493855 DOI: 10.1016/j.febslet.2010.05.018

Abstact

dUTP pyrophosphatases (dUTPases) are essential for genome integrity. Recent results allowed characterization of the role of conserved residues. Here we analyzed the Asp/Asn mutation within conserved Motif I of human and mycobacterial dUTPases, wherein the Asp residue was previously implicated in Mg(2+)-coordination. Our results on transient/steady-state kinetics, ligand binding and a 1.80 A resolution structure of the mutant mycobacterial enzyme, in comparison with wild type and C-terminally truncated structures, argue that this residue has a major role in providing intra- and intersubunit contacts, but is not essential for Mg(2+) accommodation. We conclude that in addition to the role of conserved motifs in substrate accommodation, direct subunit interaction between protein atoms of active site residues from different conserved motifs are crucial for enzyme function.

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