ISDA

Deposition Date 2009-04-22

Release Date 2009-09-08

Last Version Date 2024-11-20

Entry Detail

PDB ID:

3H5S

Keywords:

TRANSFERASE

Title:

Hepatitis C virus polymerase NS5B with saccharin inhibitor

Biological Source:

Source Organism:

Hepatitis C virus (Taxon ID: 11105)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.00 Å

R-Value Free:

0.24

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase
Chain IDs:A, B
Chain Length:576
Number of Molecules:2
Biological Source:Hepatitis C virus

UniProt ID:P26663 Pfam ID:PF00998 EC:3.4.21.98

Ligand Molecules

H5S

Primary Citation

Non-nucleoside inhibitors of HCV polymerase NS5B. Part 4: structure-based design, synthesis, and biological evaluation of benzo[d]isothiazole-1,1-dioxides

de Vicente, J, Hendricks, R.T, Smith, D.B, Fell, J.B, Fischer, J, Spencer, S.R, Stengel, P.J, Mohr, P, Robinson, J.E, Blake, J.F, Hilgenkamp, R.K, Yee, C, Adjabeng, G, Elworthy, T.R, Li, J, Wang, B, Bamberg, J.T, Harris, S.F, Wong, A, Leveque, V.J, Najera, I, Le Pogam, S, Rajyaguru, S, Ao-Ieong, G, Alexandrova, L, Larrabee, S, Brandl, M, Briggs, A, Sukhtankar, S, Farrell, R.Show

Bioorg.Med.Chem.Lett. 19 5652 5656 (2009)

PMID: 19709881 DOI: 10.1016/j.bmcl.2009.08.022

Abstact

A series of benzo[d]isothiazole-1,1-dioxides were designed and evaluated as inhibitors of HCV polymerase NS5B. Structure-based design led to the incorporation of a high affinity methyl sulfonamide group. Structure-activity relationship (SAR) studies of this series revealed analogues with submicromolar potencies in the HCV replicon assay and moderate pharmacokinetic properties. SAR studies combined with structure based drug design focused on the sulfonamide region led to a novel and potent cyclic analogue.

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Primary Citation of related structures