3H3X image
Deposition Date 2009-04-17
Release Date 2009-07-21
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3H3X
Keywords:
Title:
Structure of the V74M large subunit mutant of NI-FE hydrogenase in an oxidized state
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Periplasmic [NiFe] hydrogenase small subunit
Gene (Uniprot):hydA
Chain IDs:A, C (auth: B), E (auth: C)
Chain Length:264
Number of Molecules:3
Biological Source:Desulfovibrio fructosovorans
Polymer Type:polypeptide(L)
Molecule:Periplasmic [NiFe] hydrogenase large subunit
Gene (Uniprot):hydB
Mutations:V74M
Chain IDs:B (auth: Q), D (auth: R), F (auth: S)
Chain Length:549
Number of Molecules:3
Biological Source:Desulfovibrio fructosovorans
Primary Citation

Abstact

Hydrogenases catalyze the conversion between 2H(+) + 2e(-) and H(2)(1). Most of these enzymes are inhibited by O(2), which represents a major drawback for their use in biotechnological applications. Improving hydrogenase O(2) tolerance is therefore a major contemporary challenge to allow the implementation of a sustainable hydrogen economy. We succeeded in improving O(2) tolerance, which we define here as the ability of the enzyme to resist for several minutes to O(2) exposure, by substituting with methionines small hydrophobic residues strongly conserved in the gas channel. Remarkably, the mutated enzymes remained active in the presence of an O(2) concentration close to that found in aerobic solutions in equilibrium with air, while the wild type enzyme is inhibited in a few seconds. Crystallographic and spectroscopic studies showed that the structure and the chemistry at the active site are not affected by the mutations. Kinetic studies demonstrated that the inactivation is slower and reactivation faster in these mutants. We propose that in addition to restricting O(2) diffusion to the active site of the enzyme, methionine may also interact with bound peroxide and provide an assisted escape route for H(2)O(2) toward the gas channel. These results show for the first time that it is possible to improve O(2)-tolerance of [NiFe] hydrogenases, making possible the development of biohydrogen production systems.

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