3GZU image
Deposition Date 2009-04-07
Release Date 2009-07-14
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3GZU
Keywords:
Title:
VP7 recoated rotavirus DLP
Biological Source:
Source Organism:
Rotavirus A (Taxon ID: 28875)
Rhesus Rotavirus (Taxon ID: 10969)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Inner capsid protein VP2
Chain IDs:A, B
Chain Length:800
Number of Molecules:2
Biological Source:Rotavirus A
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Intermediate capsid protein VP6
Chain IDs:C, D, E, F, G, H, I, J, K, L, M, N, O
Chain Length:397
Number of Molecules:13
Biological Source:Rhesus Rotavirus
Ligand Molecules
Primary Citation
Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM.
Proc.Natl.Acad.Sci.USA 106 10644 10648 (2009)
PMID: 19487668 DOI: 10.1073/pnas.0904024106

Abstact

Rotaviruses, major causes of childhood gastroenteritis, are nonenveloped, icosahedral particles with double-strand RNA genomes. By the use of electron cryomicroscopy and single-particle reconstruction, we have visualized a rotavirus particle comprising the inner capsid coated with the trimeric outer-layer protein, VP7, at a resolution (4 A) comparable with that of X-ray crystallography. We have traced the VP7 polypeptide chain, including parts not seen in its X-ray crystal structure. The 3 well-ordered, 30-residue, N-terminal "arms" of each VP7 trimer grip the underlying trimer of VP6, an inner-capsid protein. Structural differences between free and particle-bound VP7 and between free and VP7-coated inner capsids may regulate mRNA transcription and release. The Ca(2+)-stabilized VP7 intratrimer contact region, which presents important neutralizing epitopes, is unaltered upon capsid binding.

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Primary Citation of related structures