3GYW image
Entry Detail
PDB ID:
3GYW
Keywords:
Title:
Crystal structure of nucleosome assembly protein from Plasmodium falciparum at 2.4 A resolution
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2009-04-06
Release Date:
2009-05-12
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nucleosome assembly protein 1, putative
Chain IDs:A
Chain Length:249
Number of Molecules:1
Biological Source:Plasmodium falciparum
Primary Citation
Iodide-SAD, SIR and SIRAS phasing for structure solution of a nucleosome assembly protein.
Acta Crystallogr.,Sect.D 65 618 622 (2009)
PMID: 19465776 DOI: 10.1107/S0907444909013171

Abstact

The crystal structure of Plasmodium falciparum nucleosome assembly protein (PfNapL) was determined by iodide-SAD/SIRAS phasing methods using iodide-SAD data to 3.0 A resolution and native data to 2.4 A resolution. Halide-derivatized PfNapL crystals were obtained using the quick cryo-soaking method in which the native crystals were soaked in a cryosolution consisting of 500 mM NaI for a short period of 30-60 s and data were collected at an in-house X-ray source using Cu Kalpha radiation. Despite a low anomalous signal-to-noise ratio of <1.2 in the >3.5 A resolution bin, the data were sufficient to determine the structure by SAD/SIR/SIRAS methods using the soaked iodides. Previously, structure solution had failed with both molecular-replacement and selenomethionine-derivatization techniques owing to reasons that are detailed in this work. The phasing at low resolution with three iodides per monomer with high temperature factors was successful using any of the SAD, SIR or SIRAS methods.

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