ISDA

Deposition Date 2009-04-01

Release Date 2010-04-07

Last Version Date 2023-09-06

Entry Detail

PDB ID:

3GWT

Keywords:

HYDROLASE

Title:

Catalytic domain of human phosphodiesterase 4B2B in complex with a quinoline inhibitor

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.75 Å

R-Value Free:

0.24

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

I 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:cAMP-specific 3',5'-cyclic phosphodiesterase 4B
Gene (Uniprot):PDE4B
Mutations:S654A, S659A, S661A
Chain IDs:A
Chain Length:353
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q07343 Pfam ID:PF00233 EC:3.1.4.53

Ligand Molecules

066

ARS

GOL

Primary Citation

Quinolines as a novel structural class of potent and selective PDE4 inhibitors. Optimisation for inhaled administration.

Woodrow, M.D, Ballantine, S.P, Barker, M.D, Clarke, B.J, Dawson, J, Dean, T.W, Delves, C.J, Evans, B, Gough, S.L, Guntrip, S.B, Holman, S, Holmes, D.S, Kranz, M, Lindvaal, M.K, Lucas, F.S, Neu, M, Ranshaw, L.E, Solanke, Y.E, Somers, D.O, Ward, P, Wiseman, J.O.Show

Bioorg.Med.Chem.Lett. 19 5261 5265 (2009)

PMID: 19656678 DOI: 10.1016/j.bmcl.2009.04.012

Abstact

Crystallography driven optimisation of a lead derived from similarity searching of the GSK compound collection resulted in the discovery of quinoline-3-carboxamides as highly potent and selective inhibitors of phosphodiesterase 4B. This series has been optimized to GSK256066, a potent PDE4B inhibitor which also inhibits LPS induced production of TNF-alpha from isolated human peripheral blood mononuclear cells with a pIC(50) of 11.1. GSK256066 also has a suitable profile for inhaled dosing.

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Primary Citation of related structures