3GVL image
Deposition Date 2009-03-31
Release Date 2010-03-02
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3GVL
Keywords:
Title:
Crystal Structure of endo-neuraminidaseNF
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.41 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Endo-N-acetylneuraminidase
Chain IDs:A
Chain Length:670
Number of Molecules:1
Biological Source:Enterobacteria phage K1F
Ligand Molecules
Primary Citation
Structural basis for the recognition and cleavage of polysialic acid by the bacteriophage K1F tailspike protein EndoNF.
J.Mol.Biol. 397 341 351 (2010)
PMID: 20096705 DOI: 10.1016/j.jmb.2010.01.028

Abstact

An alpha-2,8-linked polysialic acid (polySia) capsule confers immune tolerance to neuroinvasive, pathogenic prokaryotes such as Escherichia coli K1 and Neisseria meningitidis and supports host infection by means of molecular mimicry. Bacteriophages of the K1 family, infecting E. coli K1, specifically recognize and degrade this polySia capsule utilizing tailspike endosialidases. While the crystal structure for the catalytic domain of the endosialidase of bacteriophage K1F (endoNF) has been solved, there is yet no structural information on the mode of polySia binding and cleavage available. The crystal structure of activity deficient active-site mutants of the homotrimeric endoNF cocrystallized with oligomeric sialic acid identified three independent polySia binding sites in each endoNF monomer. The bound oligomeric sialic acid displays distinct conformations at each site. In the active site, a Sia(3) molecule is bound in an extended conformation representing the enzyme-product complex. Structural and biochemical data supported by molecular modeling enable to propose a reaction mechanism for polySia cleavage by endoNF.

Legend

Protein

Chemical

Disease

Primary Citation of related structures