3GV2 image
Deposition Date 2009-03-30
Release Date 2009-06-23
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3GV2
Keywords:
Title:
X-ray Structure of Hexameric HIV-1 CA
Biological Source:
Method Details:
Experimental Method:
Resolution:
7.00 Å
R-Value Free:
0.32
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
C 1 2 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein p24,Carbon dioxide-concentrating mechanism protein CcmK homolog 4
Gene (Uniprot):gag, ccmK4
Mutagens:W184A,M185A
Chain IDs:A, B, C, D, E, F
Chain Length:342
Number of Molecules:6
Biological Source:Human immunodeficiency virus type 1 group M subtype B (isolate NY5), Synechocystis sp. (strain PCC 6803 / Kazusa)
Ligand Molecules
Primary Citation
X-ray structures of the hexameric building block of the HIV capsid.
Cell(Cambridge,Mass.) 137 1282 1292 (2009)
PMID: 19523676 DOI: 10.1016/j.cell.2009.04.063

Abstact

The mature capsids of HIV and other retroviruses organize and package the viral genome and its associated enzymes for delivery into host cells. The HIV capsid is a fullerene cone: a variably curved, closed shell composed of approximately 250 hexamers and exactly 12 pentamers of the viral CA protein. We devised methods for isolating soluble, assembly-competent CA hexamers and derived four crystallographically independent models that define the structure of this capsid assembly unit at atomic resolution. A ring of six CA N-terminal domains form an apparently rigid core, surrounded by an outer ring of C-terminal domains. Mobility of the outer ring appears to be an underlying mechanism for generating the variably curved lattice in authentic capsids. Hexamer-stabilizing interfaces are highly hydrated, and this property may be key to the formation of quasi-equivalent interactions within hexamers and pentamers. The structures also clarify the molecular basis for capsid assembly inhibition and should facilitate structure-based drug design strategies.

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Primary Citation of related structures
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