3GQG image
Entry Detail
PDB ID:
3GQG
Title:
Crystal structure at acidic pH of the ferric form of the Root effect hemoglobin from Trematomus bernacchii.
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2009-03-24
Release Date:
2009-10-13
Method Details:
Experimental Method:
Resolution:
1.73 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hemoglobin subunit alpha
Chain IDs:A, C
Chain Length:143
Number of Molecules:2
Biological Source:Trematomus bernacchii
Polymer Type:polypeptide(L)
Description:Hemoglobin subunit beta
Chain IDs:B, D
Chain Length:146
Number of Molecules:2
Biological Source:Trematomus bernacchii
Ligand Molecules
Primary Citation
Correlation between hemichrome stability and the root effect in tetrameric hemoglobins.
Biophys.J. 97 866 874 (2009)
PMID: 19651045 DOI: 10.1016/j.bpj.2009.04.056

Abstact

Oxidation of Hbs leads to the formation of different forms of Fe(III) that are relevant to a range of biochemical and physiological functions. Here we report a combined EPR/x-ray crystallography study performed at acidic pH on six ferric tetrameric Hbs. Five of the Hbs were isolated from the high-Antarctic notothenioid fishes Trematomus bernacchii, Trematomus newnesi, and Gymnodraco acuticeps, and one was isolated from the sub-Antarctic notothenioid Cottoperca gobio. Our EPR analysis reveals that 1), in all of these Hbs, at acidic pH the aquomet form and two hemichromes coexist; and 2), only in the three Hbs that exhibit the Root effect is a significant amount of the pentacoordinate (5C) high-spin Fe(III) form found. The crystal structure at acidic pH of the ferric form of the Root-effect Hb from T. bernacchii is also reported at 1.7 A resolution. This structure reveals a 5C state of the heme iron for both the alpha- and beta-chains within a T quaternary structure. Altogether, the spectroscopic and crystallographic results indicate that the Root effect and hemichrome stability at acidic pH are correlated in tetrameric Hbs. Furthermore, Antarctic fish Hbs exhibit higher peroxidase activity than mammalian and temperate fish Hbs, suggesting that a partial hemichrome state in tetrameric Hbs, unlike in monomeric Hbs, does not remove the need for protection from peroxide attack, in contrast to previous results from monomeric Hbs.

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Primary Citation of related structures