3GMZ image
Deposition Date 2009-03-15
Release Date 2010-01-26
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3GMZ
Title:
Crystal of human arginase in complex with L-ornithine. Resolution 1.43 A.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.43 Å
R-Value Free:
0.18
R-Value Work:
0.14
Space Group:
P 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Arginase-1
Gene (Uniprot):ARG1
Chain IDs:A, B
Chain Length:322
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Binding of alpha,alpha-Disubstituted Amino Acids to Arginase Suggests New Avenues for Inhibitor Design
J.Med.Chem. 54 5432 5443 (2011)
PMID: 21728378 DOI: 10.1021/jm200443b

Abstact

Arginase is a binuclear manganese metalloenzyme that hydrolyzes L-arginine to form L-ornithine and urea, and aberrant arginase activity is implicated in various diseases such as erectile dysfunction, asthma, atherosclerosis, and cerebral malaria. Accordingly, arginase inhibitors may be therapeutically useful. Continuing our efforts to expand the chemical space of arginase inhibitor design and inspired by the binding of 2-(difluoromethyl)-L-ornithine to human arginase I, we now report the first study of the binding of α,α-disubstituted amino acids to arginase. Specifically, we report the design, synthesis, and assay of racemic 2-amino-6-borono-2-methylhexanoic acid and racemic 2-amino-6-borono-2-(difluoromethyl)hexanoic acid. X-ray crystal structures of human arginase I and Plasmodium falciparum arginase complexed with these inhibitors reveal the exclusive binding of the L-stereoisomer; the additional α-substituent of each inhibitor is readily accommodated and makes new intermolecular interactions in the outer active site of each enzyme. Therefore, this work highlights a new region of the protein surface that can be targeted for additional affinity interactions, as well as the first comparative structural insights on inhibitor discrimination between a human and a parasitic arginase.

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Primary Citation of related structures