3GIG image
Deposition Date 2009-03-05
Release Date 2009-09-15
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3GIG
Keywords:
Title:
Crystal structure of phosphorylated DesKC in complex with AMP-PCP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.33
R-Value Work:
0.28
R-Value Observed:
0.29
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sensor histidine kinase desK
Gene (Uniprot):desK
Chain IDs:A
Chain Length:218
Number of Molecules:1
Biological Source:Bacillus subtilis
Polymer Type:polypeptide(L)
Molecule:Sensor histidine kinase desK
Gene (Uniprot):desK
Chain IDs:B
Chain Length:218
Number of Molecules:1
Biological Source:Bacillus subtilis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
NEP B HIS N1-PHOSPHONOHISTIDINE
Primary Citation
Structural plasticity and catalysis regulation of a thermosensor histidine kinase
Proc.Natl.Acad.Sci.USA 106 16185 16190 (2009)
PMID: 19805278 DOI: 10.1073/pnas.0906699106

Abstact

Temperature sensing is essential for the survival of living cells. A major challenge is to understand how a biological thermometer processes thermal information to optimize cellular functions. Using structural and biochemical approaches, we show that the thermosensitive histidine kinase, DesK, from Bacillus subtilis is cold-activated through specific interhelical rearrangements in its central four-helix bundle domain. As revealed by the crystal structures of DesK in different functional states, the plasticity of this helical domain influences the catalytic activities of the protein, either by modifying the mobility of the ATP-binding domains for autokinase activity or by modulating binding of the cognate response regulator to sustain the phosphotransferase and phosphatase activities. The structural and biochemical data suggest a model in which the transmembrane sensor domain of DesK promotes these structural changes through conformational signals transmitted by the membrane-connecting two-helical coiled-coil, ultimately controlling the alternation between output autokinase and phosphatase activities. The structural comparison of the different DesK variants indicates that incoming signals can take the form of helix rotations and asymmetric helical bends similar to those reported for other sensing systems, suggesting that a similar switching mechanism could be operational in a wide range of sensor histidine kinases.

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Primary Citation of related structures