ISDA

Entry Detail

PDB ID:

3GID

Keywords:

LIGASE

Title:

The biotin carboxylase (BC) domain of human Acetyl-CoA Carboxylase 2 (ACC2) in complex with Soraphen A

Biological Source:

Source Organism:

Homo sapiens

Host Organism:

Escherichia coli

PDB Version:

Deposition Date:

2009-03-05

Release Date:

2009-03-17

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.30 Å

R-Value Free:

0.24

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

C 2 2 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Acetyl-CoA carboxylase 2
Chain IDs:A, B
Chain Length:540
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:O00763 Pfam ID:PF00289, PF02786, PF02785 EC:6.3.4.14

Ligand Molecules

S1A

Primary Citation

Synthesis and characterization of a BODIPY-labeled derivative of Soraphen A that binds to acetyl-CoA carboxylase.

Raymer, B, Kavana, M, Price, A, Wang, B, Corcoran, L, Kulathila, R, Groarke, J, Mann, T.Show

Bioorg.Med.Chem.Lett. 19 2804 2807 (2009)

PMID: 19359168 DOI: 10.1016/j.bmcl.2009.03.107

Abstact

BODIPY-labeled Soraphen A derivative 4 was synthesized and characterized as an acetyl-CoA carboxylase (ACC) binder. Biophysical measurements indicate that the molecule binds in the biotin carboxylase domain where Soraphen A has been shown to bind. The fluorescent label of the BODIPY can be used to biophysically identify a compound that binds to the Soraphen A site of the biotin carboxylase domain versus the carboxytransferase domain of ACC.

Legend

Protein

Chemical

Disease

Primary Citation of related structures