3GID image
Deposition Date 2009-03-05
Release Date 2009-03-17
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3GID
Keywords:
LIGASE
Title:
The biotin carboxylase (BC) domain of human Acetyl-CoA Carboxylase 2 (ACC2) in complex with Soraphen A
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.30 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 2 2 21
3GID validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acetyl-CoA carboxylase 2
Gene (Uniprot):ACACB
Chain IDs:A, B
Chain Length:540
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:O00763 Pfam ID:PF00289, PF02786, PF02785 EC:6.3.4.14
Ligand Molecules
S1A
Primary Citation
Synthesis and characterization of a BODIPY-labeled derivative of Soraphen A that binds to acetyl-CoA carboxylase.
Bioorg.Med.Chem.Lett. 19 2804 2807 (2009)
PMID: 19359168 DOI: 10.1016/j.bmcl.2009.03.107

Abstact

BODIPY-labeled Soraphen A derivative 4 was synthesized and characterized as an acetyl-CoA carboxylase (ACC) binder. Biophysical measurements indicate that the molecule binds in the biotin carboxylase domain where Soraphen A has been shown to bind. The fluorescent label of the BODIPY can be used to biophysically identify a compound that binds to the Soraphen A site of the biotin carboxylase domain versus the carboxytransferase domain of ACC.

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Primary Citation of related structures
3GID