3FX6 image
Deposition Date 2009-01-20
Release Date 2009-08-25
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3FX6
Keywords:
Title:
X-RAY crystallographic studies on the complex of carboxypeptidase A with the inhibitor using alpha-nitro ketone as the zinc-binding group
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Carboxypeptidase A1
Gene (Uniprot):CPA1
Chain IDs:A, B (auth: C), C (auth: E)
Chain Length:307
Number of Molecules:3
Biological Source:Bos taurus
Primary Citation
Characterization of alpha-nitromethyl ketone as a new zinc-binding group based on structural analysis of its complex with carboxypeptidase A
Bioorg.Med.Chem.Lett. 19 5009 5011 (2009)
PMID: 19646864 DOI: 10.1016/j.bmcl.2009.07.060

Abstact

Zinc-binding groups (ZBGs) are exhaustively applied in the development of the new inhibitors against a wide variety of physiologically and pathologically important zinc proteases. Here the alpha-nitro ketone was presented as a new ZBG, which is a transition-state analog featured by the unique bifurcated hydrogen bonds at the active site of carboxypeptidase A based on the structural analysis. Introduction of a nitro group at the alpha-position of the ketone could provide more non-covalent interactions without loss of the abilities to form a tetrahedral transition-state analog.

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Primary Citation of related structures