3FW4 image
Deposition Date 2009-01-16
Release Date 2010-05-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3FW4
Title:
Crystal structure of Siderocalin (NGAL, Lipocalin 2) complexed with Ferric Catechol
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Neutrophil gelatinase-associated lipocalin
Gene (Uniprot):LCN2
Mutations:C87S
Chain IDs:A, B, C
Chain Length:178
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Iron traffics in circulation bound to a siderocalin (Ngal)-catechol complex.
Nat.Chem.Biol. 6 602 609 (2010)
PMID: 20581821 DOI: 10.1038/nchembio.402

Abstact

The lipocalins are secreted proteins that bind small organic molecules. Scn-Ngal (also known as neutrophil gelatinase associated lipocalin, siderocalin, lipocalin 2) sequesters bacterial iron chelators, called siderophores, and consequently blocks bacterial growth. However, Scn-Ngal is also prominently expressed in aseptic diseases, implying that it binds additional ligands and serves additional functions. Using chemical screens, crystallography and fluorescence methods, we report that Scn-Ngal binds iron together with a small metabolic product called catechol. The formation of the complex blocked the reactivity of iron and permitted its transport once introduced into circulation in vivo. Scn-Ngal then recycled its iron in endosomes by a pH-sensitive mechanism. As catechols derive from bacterial and mammalian metabolism of dietary compounds, the Scn-Ngal-catechol-Fe(III) complex represents an unforeseen microbial-host interaction, which mimics Scn-Ngal-siderophore interactions but instead traffics iron in aseptic tissues. These results identify an endogenous siderophore, which may link the disparate roles of Scn-Ngal in different diseases.

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Primary Citation of related structures