3FOW image
Deposition Date 2009-01-02
Release Date 2009-12-29
Last Version Date 2023-09-20
Entry Detail
PDB ID:
3FOW
Keywords:
Title:
Plasmodium Purine Nucleoside Phosphorylase V66I-V73I-Y160F Mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 41 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Uridine phosphorylase, putative
Gene (Uniprot):PNP
Mutations:V66I,V73I,Y160F
Chain IDs:A, B
Chain Length:276
Number of Molecules:2
Biological Source:Plasmodium falciparum
Primary Citation
Structural determinants of the 5'-methylthioinosine specificity of Plasmodium purine nucleoside phosphorylase.
Plos One 9 e84384 e84384 (2014)
PMID: 24416224 DOI: 10.1371/journal.pone.0084384

Abstact

Plasmodium parasites rely upon purine salvage for survival. Plasmodium purine nucleoside phosphorylase is part of the streamlined Plasmodium purine salvage pathway that leads to the phosphorylysis of both purines and 5'-methylthiopurines, byproducts of polyamine synthesis. We have explored structural features in Plasmodium falciparum purine nucleoside phosphorylase (PfPNP) that affect efficiency of catalysis as well as those that make it suitable for dual specificity. We used site directed mutagenesis to identify residues critical for PfPNP catalytic activity as well as critical residues within a hydrophobic pocket required for accommodation of the 5'-methylthio group. Kinetic analysis data shows that several mutants had disrupted binding of the 5'-methylthio group while retaining activity for inosine. A triple PfPNP mutant that mimics Toxoplasma gondii PNP had significant loss of 5'-methylthio activity with retention of inosine activity. Crystallographic investigation of the triple mutant PfPNP with Tyr160Phe, Val66Ile, andVal73Ile in complex with the transition state inhibitor immucillin H reveals fewer hydrogen bond interactions for the inhibitor in the hydrophobic pocket.

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Primary Citation of related structures