3FOO image
Deposition Date 2008-12-30
Release Date 2009-07-14
Last Version Date 2024-12-25
Entry Detail
PDB ID:
3FOO
Title:
A Triangular Cytochrome b562 Superstructure Mediated by Ni Coordination - Monoclinic Form
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562
Gene (Uniprot):cybC
Mutagens:K59C, R62A, H63A, K77H, R98C, Y101C
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:106
Number of Molecules:12
Biological Source:Escherichia coli
Primary Citation
A superprotein triangle driven by nickel(II) coordination: exploiting non-natural metal ligands in protein self-assembly
J.Am.Chem.Soc. 131 9136 9137 (2009)
PMID: 19527025 DOI: 10.1021/ja9000695

Abstact

We previously devised a strategy (metal-directed protein self-assembly, MDPSA) that utilizes the simultaneous stability, lability, and directionality of metal-ligand bonds to drive protein-protein interactions. Here we show that both the structural and functional scopes of MDPSA can be broadened by incorporation of non-natural metal-chelating ligands onto protein surfaces. A cytochrome cb(562) variant, MBP-Phen1, which features a covalently attached phenanthroline (Phen) group on its surface, self-assembles into an unusual triangular architecture (Ni(3):MBP-Phen1(3)) upon binding Ni as a result of specific Phen-protein interactions. The crystal structure of Ni(3):MBP-Phen1(3) reveals that the Phen group is buried in a small pocket on the protein surface, which results in an unsaturated Ni coordination environment.

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Primary Citation of related structures