3FN6 image
Deposition Date 2008-12-23
Release Date 2009-01-06
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3FN6
Keywords:
Title:
Crystal structure of sortase A from Streptococcus pyogenes serotype M1 strain SF370 with the active site Cys in its sulphenic acid form
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sortase A
Gene (Uniprot):SPy_1154
Chain IDs:A
Chain Length:187
Number of Molecules:1
Biological Source:Streptococcus pyogenes serotype M1
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSX A CYS S-OXY CYSTEINE
Primary Citation
Crystal Structure of Streptococcus pyogenes Sortase A: Implications for Sortase mechanism
J.Biol.Chem. 284 6924 6933 (2009)
PMID: 19129180 DOI: 10.1074/jbc.M805406200

Abstact

Sortases are a family of Gram-positive bacterial transpeptidases that anchor secreted proteins to bacterial cell surfaces. These include many proteins that play critical roles in the virulence of Gram-positive bacterial pathogens such that sortases are attractive targets for development of novel antimicrobial agents. All Gram-positive pathogens express a "housekeeping" sortase that recognizes the majority of secreted proteins containing an LPXTG wall-sorting motif and covalently attaches these to bacterial cell wall peptidoglycan. Many Gram-positive pathogens also express additional sortases that link a small number of proteins, often with variant wall-sorting motifs, to either other surface proteins or peptidoglycan. To better understand the mechanisms of catalysis and substrate recognition by the housekeeping sortase produced by the important human pathogen Streptococcus pyogenes, the crystal structure of this protein has been solved and its transpeptidase activity established in vitro. The structure reveals a novel arrangement of key catalytic residues in the active site of a sortase, the first that is consistent with kinetic analysis. The structure also provides a complete description of residue positions surrounding the active site, overcoming the limitation of localized disorder in previous structures of sortase A-type proteins. Modification of the active site Cys through oxidation to its sulfenic acid form or by an alkylating reagent supports a role for a reactive thiol/thiolate in the catalytic mechanism. These new insights into sortase structure and function could have important consequences for inhibitor design.

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