3FN3 image
Entry Detail
PDB ID:
3FN3
Keywords:
Title:
Dimeric Structure of PD-L1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-12-23
Release Date:
2009-12-29
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.29
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Programmed cell death 1 ligand 1
Chain IDs:A, B
Chain Length:221
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A dimeric structure of PD-L1: functional units or evolutionary relics?
Protein Cell 1 153 160 (2010)
PMID: 21203985 DOI: 10.1007/s13238-010-0022-1

Abstact

PD-L1 is a member of the B7 protein family, most of whose members so far were identified as dimers in a solution and crystalline state, either complexed or uncomplexed with their ligand(s). The binding of PD-L1 with its receptor PD-1 (CD279) delivers an inhibitory signal regulating the T cell function. Simultaneously with the Garboczi group, we successfully solved another structure of human PD-L1 (hPD-L1). Our protein crystallized in the space group of C222(1) with two hPD-L1 molecules per asymmetric unit. After comparison of reported B7 structures, we have found some intrinsic factors involved in the interaction of these two molecules. Based on these results, we tend to believe this uncomplexed hPD-L1 structure demonstrated its potential dimeric state in solution, although it could just be an evolutionary relic, too weak to be detected under present technology, or still a functional unit deserved our attentions.

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