3FMG image
Deposition Date 2008-12-22
Release Date 2009-06-23
Last Version Date 2024-11-27
Entry Detail
PDB ID:
3FMG
Keywords:
Title:
Structure of rotavirus outer capsid protein VP7 trimer in complex with a neutralizing Fab
Biological Source:
Source Organism:
Simian rotavirus (Taxon ID: 10922)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.23
R-Value Work:
0.22
Space Group:
P 41 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycoprotein VP7
Chain IDs:C (auth: A)
Chain Length:276
Number of Molecules:1
Biological Source:Simian rotavirus
Polymer Type:polypeptide(L)
Molecule:Fab of neutralizing antibody 4F8, heavy chain
Chain IDs:B (auth: H)
Chain Length:221
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab of neutralizing antibody 4F8, light chain
Chain IDs:A (auth: L)
Chain Length:211
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab.
Science 324 1444 1447 (2009)
PMID: 19520960 DOI: 10.1126/science.1170481

Abstact

Rotavirus outer-layer protein VP7 is a principal target of protective antibodies. Removal of free calcium ions (Ca2+) dissociates VP7 trimers into monomers, releasing VP7 from the virion, and initiates penetration-inducing conformational changes in the other outer-layer protein, VP4. We report the crystal structure at 3.4 angstrom resolution of VP7 bound with the Fab fragment of a neutralizing monoclonal antibody. The Fab binds across the outer surface of the intersubunit contact, which contains two Ca2+ sites. Mutations that escape neutralization by other antibodies suggest that the same region bears the epitopes of most neutralizing antibodies. The monovalent Fab is sufficient to neutralize infectivity. We propose that neutralizing antibodies against VP7 act by stabilizing the trimer, thereby inhibiting the uncoating trigger for VP4 rearrangement. A disulfide-linked trimer is a potential subunit immunogen.

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Chemical

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Primary Citation of related structures
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