3FM7 image
Deposition Date 2008-12-19
Release Date 2009-09-15
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3FM7
Title:
Quaternary Structure of Drosophila melanogaster IC/Tctex-1/LC8; Allosteric Interactions of Dynein Light Chains with Dynein Intermediate Chain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.27
R-Value Work:
0.16
R-Value Observed:
0.18
Space Group:
P 62
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dynein light chain Tctex-type
Gene (Uniprot):Dlc90F
Chain IDs:A, B
Chain Length:111
Number of Molecules:2
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Dynein intermediate chain, cytosolic
Gene (Uniprot):sw
Chain IDs:C, D
Chain Length:27
Number of Molecules:2
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Dynein light chain 1, cytoplasmic
Gene (Uniprot):ctp
Chain IDs:E, F
Chain Length:89
Number of Molecules:2
Biological Source:Drosophila melanogaster
Ligand Molecules
Primary Citation
Multivalency in the assembly of intrinsically disordered Dynein intermediate chain.
J.Biol.Chem. 284 33115 33121 (2009)
PMID: 19759397 DOI: 10.1074/jbc.M109.048587

Abstact

Dynein light chains are thought to increase binding efficiency of dynein intermediate chain to both dynein heavy chain and dynactin, but their exact role is not clear. Isothermal titration calorimetry and x-ray crystallography reported herein indicate that multivalency effects underlie efficient dynein assembly and regulation. For a ternary complex of a 60-amino acid segment of dynein intermediate chain (IC) bound to two homodimeric dynein light chains Tctex1 and LC8, there is a 50-fold affinity enhancement for the second light chain binding. For a designed IC construct containing two LC8 sites, observed the 1000-fold enhancement reflects a remarkably pure entropic chelate effect of a magnitude commensurate with theoretical predictions. The lower enhancement in wild-type IC is attributed to unfavorable free energy changes associated with incremental interactions of IC with Tctex1. Our results show assembled dynein IC as an elongated, flexible polybivalent duplex, and suggest that polybivalency is an important general mechanism for constructing stable yet reversible and functionally versatile complexes.

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Primary Citation of related structures