3FLM image
Deposition Date 2008-12-19
Release Date 2009-03-24
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3FLM
Keywords:
Title:
Crystal structure of menD from E.coli
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.27
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase
Gene (Uniprot):menD
Mutagens:P36L
Chain IDs:A, B
Chain Length:556
Number of Molecules:2
Biological Source:Escherichia coli K-12
Primary Citation
Structural insights of the MenD from Escherichia coli reveal ThDP affinity.
Biochem.Biophys.Res.Commun. 380 797 801 (2009)
PMID: 19338755 DOI: 10.1016/j.bbrc.2009.01.168

Abstact

MenD (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate) synthase belongs to the superfamily of thiamin diphosphate-dependent decarboxylases, which converts isochorismate and 2-oxoglutarate to SHCHC, pyruvate, and carbon dioxide. Here, we report the first crystal structure of apo-MenD from Escherichia coli determined in tetragonal crystal form. The subunit displays the typical three-domain structure observed for ThDP-dependent enzymes. Analytical gel filtration shows that EcMenD behaves as a dimer as well as a tetramer. Circular dichroism and isothermal calorimetry results confirm EcMenD dependency on ThDP, which concomitantly helps to stabilize with better configuration.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback