3FKU image
Deposition Date 2008-12-17
Release Date 2009-02-24
Last Version Date 2024-12-25
Entry Detail
PDB ID:
3FKU
Title:
Crystal structure of influenza hemagglutinin (H5) in complex with a broadly neutralizing antibody F10
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Chain IDs:A, C, E, G, I, K
Chain Length:338
Number of Molecules:6
Biological Source:Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Chain IDs:B, D, F, H, J, L
Chain Length:182
Number of Molecules:6
Biological Source:Influenza A virus (A/Viet Nam/1203/2004(H5N1))
Polymer Type:polypeptide(L)
Molecule:Neutralizing antibody F10
Chain IDs:M (auth: X), N (auth: Y), O (auth: Z), P (auth: S), Q (auth: T), R (auth: U)
Chain Length:280
Number of Molecules:6
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses.
Nat.Struct.Mol.Biol. 16 265 273 (2009)
PMID: 19234466 DOI: 10.1038/nsmb.1566

Abstact

Influenza virus remains a serious health threat, owing to its ability to evade immune surveillance through rapid genetic drift and reassortment. Here we used a human non-immune antibody phage-display library and the H5 hemagglutinin ectodomain to select ten neutralizing antibodies (nAbs) that were effective against all group 1 influenza viruses tested, including H5N1 'bird flu' and the H1N1 'Spanish flu'. The crystal structure of one such nAb bound to H5 shows that it blocks infection by inserting its heavy chain into a conserved pocket in the stem region, thus preventing membrane fusion. Nine of the nAbs employ the germline gene VH1-69, and all seem to use the same neutralizing mechanism. Our data further suggest that this region is recalcitrant to neutralization escape and that nAb-based immunotherapy is a promising strategy for broad-spectrum protection against seasonal and pandemic influenza viruses.

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Primary Citation of related structures