3FEX image
Deposition Date 2008-12-01
Release Date 2009-08-11
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3FEX
Title:
Crystal structure of the CBC-importin alpha complex.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.55 Å
R-Value Free:
0.29
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear cap-binding protein subunit 1
Gene (Uniprot):NCBP1
Chain IDs:A
Chain Length:790
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear cap-binding protein subunit 2
Gene (Uniprot):NCBP2
Chain IDs:B
Chain Length:156
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Importin subunit alpha-2
Gene (Uniprot):KPNA2
Chain IDs:C
Chain Length:467
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The molecular basis for the regulation of the cap-binding complex by the importins.
Nat.Struct.Mol.Biol. 16 930 937 (2009)
PMID: 19668212 DOI: 10.1038/nsmb.1649

Abstact

The binding of capped RNAs to the cap-binding complex (CBC) in the nucleus, and their dissociation from the CBC in the cytosol, represent essential steps in RNA processing. Here we show how the nucleocytoplasmic transport proteins importin-alpha and importin-beta have key roles in regulating these events. As a first step toward understanding the molecular basis for this regulation, we determined a 2.2-A resolution X-ray structure for a CBC-importin-alpha complex that provides a detailed picture for how importin-alpha binds to the CBP80 subunit of the CBC. Through a combination of biochemical studies, X-ray crystallographic information and small-angle scattering experiments, we then determined how importin-beta binds to the CBC through its CBP20 subunit. Together, these studies enable us to propose a model describing how importin-beta stimulates the dissociation of capped RNA from the CBC in the cytosol following its nuclear export.

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Primary Citation of related structures
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