3FDL image
Deposition Date 2008-11-26
Release Date 2009-03-10
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3FDL
Keywords:
Title:
Bim BH3 peptide in complex with Bcl-xL
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.78 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Apoptosis regulator Bcl-X
Gene (Uniprot):BCL2L1
Chain IDs:A
Chain Length:158
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bcl-2-like protein 11
Gene (Uniprot):BCL2L11
Chain IDs:B
Chain Length:26
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
High-Resolution Structural Characterization of a Helical alpha/beta-Peptide Foldamer Bound to the Anti-Apoptotic Protein Bcl-x(L)
Angew.Chem.Int.Ed.Engl. 48 4318 4322 (2009)
PMID: 19229915 DOI: 10.1002/anie.200805761

Abstact

Get into the groove: The first high-resolution structure of a foldamer bound to a protein target is described (see picture; foldamer in sticks). The foldamer consists of alpha- and beta-amino acid residues and is bound to the anti-apoptotic protein Bcl-x(L). The overall binding mode and key interactions observed in the foldamer/Bcl-x(L) complex mimic those seen in complexes of Bcl-x(L) with natural alpha-peptide ligands. Additional contacts in the foldamer/Bcl-x(L) complex involving beta-amino acid residues appear to contribute to binding affinity.

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Primary Citation of related structures
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