3FD6 image
Deposition Date 2008-11-25
Release Date 2009-09-22
Last Version Date 2023-12-27
Entry Detail
PDB ID:
3FD6
Keywords:
Title:
Crystal structure of human selenophosphate synthetase 1 complex with ADP and phosphate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.19
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Selenide, water dikinase 1
Gene (Uniprot):SEPHS1
Chain IDs:A, B
Chain Length:394
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Crystal structures of catalytic intermediates of human selenophosphate synthetase 1.
J.Mol.Biol. 390 747 759 (2009)
PMID: 19477186 DOI: 10.1016/j.jmb.2009.05.032

Abstact

Selenophosphate synthetase catalyzes the synthesis of the highly active selenium donor molecule selenophosphate, a key intermediate in selenium metabolism. We have determined the high-resolution crystal structure of human selenophosphate synthetase 1 (hSPS1). An unexpected reaction intermediate, with a tightly bound phosphate and ADP at the active site has been captured in the structure. An enzymatic assay revealed that hSPS1 possesses low ADP hydrolysis activity in the presence of phosphate. Our structural and enzymatic results suggest that consuming the second high-energy phosphoester bond of ATP could protect the labile product selenophosphate during catalytic reaction. We solved another hSPS1 structure with potassium ions at the active sites. Comparing the two structures, we were able to define the monovalent cation-binding site of the enzyme. The detailed mechanism of the ADP hydrolysis step and the exact function of the monovalent cation for hSPS1 catalytic reaction are proposed.

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Primary Citation of related structures