3F7J image
Deposition Date 2008-11-09
Release Date 2008-11-25
Last Version Date 2023-12-27
Entry Detail
PDB ID:
3F7J
Keywords:
Title:
B.subtilis YvgN
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:YvgN protein
Gene (Uniprot):yvgN
Chain IDs:A, B
Chain Length:276
Number of Molecules:2
Biological Source:Bacillus subtilis
Primary Citation
Structural and biochemical analyses of YvgN and YtbE from Bacillus subtilis
Protein Sci. 18 1792 1800 (2009)
PMID: 19585557 DOI: 10.1002/pro.178

Abstact

Bacillus subtilis is one of the most studied gram-positive bacteria. In this work, YvgN and YtbE from B. subtilis, assigned as AKR5G1 and AKR5G2 of aldo-keto reductase (AKR) superfamily. AKR catalyzes the NADPH-dependent reduction of aldehyde or aldose substrates to alcohols. YvgN and YtbE were studied by crystallographic and enzymatic analyses. The apo structures of these proteins were determined by molecular replacement, and the structure of holoenzyme YvgN with NADPH was also solved, revealing the conformational changes upon cofactor binding. Our biochemical data suggest both YvgN and YtbE have preferential specificity for derivatives of benzaldehyde, such as nitryl or halogen group substitution at the 2 or 4 positions. These proteins also showed broad catalytic activity on many standard substrates of AKR, such as glyoxal, dihydroxyacetone, and DL-glyceraldehyde, suggesting a possible role in bacterial detoxification.

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Primary Citation of related structures