3F6K image
Deposition Date 2008-11-06
Release Date 2008-12-30
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3F6K
Keywords:
SIGNALING PROTEIN
Title:
Crystal structure of the Vps10p domain of human sortilin/NTS3 in complex with neurotensin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Cricetulus griseus
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
3F6K validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sortilin
Gene (Uniprot):SORT1
Chain IDs:A
Chain Length:685
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q99523 Pfam ID:PF15902, PF15901
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neurotensin
Gene (Uniprot):NTS
Chain IDs:B (auth: N)
Chain Length:13
Number of Molecules:1
Biological Source:
UniProt ID:P30990
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
GOL
PGE
Primary Citation
Ligands bind to Sortilin in the tunnel of a ten-bladed beta-propeller domain.
Nat.Struct.Mol.Biol. 16 96 98 (2009)
PMID: 19122660 DOI: 10.1038/nsmb.1543

Abstact

The structure of the Sortilin ectodomain in complex with neurotensin has been determined at 2-A resolution, revealing that the C-terminal part of neurotensin binds in the tunnel of a ten-bladed beta-propeller domain. Binding competition studies suggest that additional binding sites, for example, for the prodomain of nerve growth factor-beta, are present in the tunnel and that competition for binding relates to the restricted space inside the propeller.

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Disease

Primary Citation of related structures
3F6K