3EXJ image
Deposition Date 2008-10-16
Release Date 2008-12-16
Last Version Date 2023-12-27
Entry Detail
PDB ID:
3EXJ
Title:
Crystal Structure of a p53 Core Tetramer Bound to DNA
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:mouse p53 core domain
Gene (Uniprot):Tp53
Chain IDs:A, B
Chain Length:197
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Crystal structure of a p53 core tetramer bound to DNA.
Oncogene 28 325 333 (2009)
PMID: 18978813 DOI: 10.1038/onc.2008.400

Abstact

The tumor suppressor p53 regulates downstream genes in response to many cellular stresses and is frequently mutated in human cancers. Here, we report the use of a crosslinking strategy to trap a tetrameric p53 DNA-binding domain (p53DBD) bound to DNA and the X-ray crystal structure of the protein/DNA complex. The structure reveals that two p53DBD dimers bind to B form DNA with no relative twist and that a p53 tetramer can bind to DNA without introducing significant DNA bending. The numerous dimer-dimer interactions involve several strictly conserved residues, thus suggesting a molecular basis for p53DBD-DNA binding cooperativity. Surface residue conservation of the p53DBD tetramer bound to DNA highlights possible regions of other p53 domain or p53 cofactor interactions.

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