3ET7 image
Deposition Date 2008-10-07
Release Date 2009-06-23
Last Version Date 2023-12-27
Entry Detail
PDB ID:
3ET7
Title:
Crystal structure of PYK2 complexed with PF-2318841
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.32
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 4 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein tyrosine kinase 2 beta
Gene (Uniprot):PTK2B
Chain IDs:A
Chain Length:277
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Trifluoromethylpyrimidine-based inhibitors of proline-rich tyrosine kinase 2 (PYK2): structure-activity relationships and strategies for the elimination of reactive metabolite formation.
Bioorg.Med.Chem.Lett. 18 6071 6077 (2008)
PMID: 18951788 DOI: 10.1016/j.bmcl.2008.10.030

Abstact

The synthesis and SAR for a series of diaminopyrimidines as PYK2 inhibitors are described. Using a combination of library and traditional medicinal chemistry techniques, a FAK-selective chemical series was transformed into compounds possessing good PYK2 potency and 10- to 20-fold selectivity against FAK. Subsequent studies found that the majority of the compounds were positive in a reactive metabolite assay, an indicator for potential toxicological liabilities. Based on the proposed mechanism for bioactivation, as well as a combination of structure-based drug design and traditional medicinal chemistry techniques, a follow-up series of PYK2 inhibitors was identified that maintained PYK2 potency, FAK selectivity and HLM stability, yet were negative in the RM assay.

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