3ES5 image
Deposition Date 2008-10-03
Release Date 2009-03-10
Last Version Date 2024-04-03
Entry Detail
PDB ID:
3ES5
Keywords:
Title:
Crystal Structure of Partitivirus (PsV-F)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.26
R-Value Work:
0.24
Space Group:
F 2 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative capsid protein
Chain IDs:A, B
Chain Length:420
Number of Molecules:2
Biological Source:Penicillium stoloniferum virus F
Ligand Molecules
Primary Citation
Atomic structure reveals the unique capsid organization of a dsRNA virus.
Proc.Natl.Acad.Sci.USA 106 4225 4230 (2009)
PMID: 19246376 DOI: 10.1073/pnas.0812071106

Abstact

For most dsRNA viruses, the genome-enclosing capsid comprises 120 copies of a single capsid protein (CP) organized into 60 icosahedrally equivalent dimers, generally identified as 2 nonsymmetricallyinteracting CP molecules with extensive lateral contacts. The crystal structure of a partitivirus, Penicillium stoloniferum virus F (PsV-F), reveals a different organization, in which the CP dimer is related by almost-perfect local 2-fold symmetry, forms prominent surface arches, and includes extensive structure swapping between the 2 subunits. An electron cryomicroscopy map of PsV-F shows that the disordered N terminus of each CP molecule interacts with the dsRNA genome and probably participates in its packaging or transcription. Intact PsV-F particles mediate semiconservative transcription, and transcripts are likely to exit through negatively charged channels at the icosahedral 5-fold axes. Other findings suggest that the PsV-F capsid is assembled from dimers of CP dimers, with an arrangement similar to flavivirus E glycoproteins.

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Primary Citation of related structures