3EQT image
Entry Detail
PDB ID:
3EQT
Title:
Crystal structure of human LGP2 C-terminal domain in complex with dsRNA
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-10-01
Release Date:
2009-03-10
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP-dependent RNA helicase DHX58
Chain IDs:A, B
Chain Length:145
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Description:5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3'
Chain IDs:C, D
Chain Length:8
Number of Molecules:2
Biological Source:
Ligand Molecules
Primary Citation
The RIG-I-like Receptor LGP2 Recognizes the Termini of Double-stranded RNA
J.Biol.Chem. 284 13881 13891 (2009)
PMID: 19278996 DOI: 10.1074/jbc.M900818200

Abstact

The RIG-I-like receptors (RLRs), RIG-I and MDA5, recognize single-stranded RNA with 5' triphosphates and double-stranded RNA (dsRNA) to initiate innate antiviral immune responses. LGP2, a homolog of RIG-I and MDA5 that lacks signaling capability, regulates the signaling of the RLRs. To establish the structural basis of dsRNA recognition by the RLRs, we have determined the 2.0-A resolution crystal structure of human LGP2 C-terminal domain bound to an 8-bp dsRNA. Two LGP2 C-terminal domain molecules bind to the termini of dsRNA with minimal contacts between the protein molecules. Gel filtration chromatography and analytical ultracentrifugation demonstrated that LGP2 binds blunt-ended dsRNA of different lengths, forming complexes with 2:1 stoichiometry. dsRNA with protruding termini bind LGP2 and RIG-I weakly and do not stimulate the activation of RIG-I efficiently in cells. Surprisingly, full-length LGP2 containing mutations that abolish dsRNA binding retained the ability to inhibit RIG-I signaling.

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