3EJB image
Deposition Date 2008-09-18
Release Date 2008-10-07
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3EJB
Title:
Crystal Structure of P450BioI in complex with tetradecanoic acid ligated Acyl Carrier Protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Acyl carrier protein
Gene (Uniprot):acpP
Chain IDs:A, C, E, G
Chain Length:97
Number of Molecules:4
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Biotin biosynthesis cytochrome P450-like enzyme
Gene (Uniprot):bioI
Chain IDs:B, D, F, H
Chain Length:404
Number of Molecules:4
Biological Source:Bacillus subtilis
Primary Citation
Structural insights from a P450 Carrier Protein complex reveal how specificity is achieved in the P450(BioI) ACP complex.
Proc.Natl.Acad.Sci.Usa 105 15696 15701 (2008)
PMID: 18838690 DOI: 10.1073/pnas.0805983105

Abstact

Cytochrome P450(BioI) (CYP107H1) from the biotin operon of Bacillus subtilis forms a seven-carbon diacid through a multistep oxidative cleavage of a fatty acid linked to acyl carrier protein (ACP). Crystal structures of P450(BioI) in complex with three different length fatty acyl-ACP (Escherichia coli) ligands show that P450(BioI) binds the fatty acid such as to force the carbon chain into a U-shape above the active site heme. This positions the C7 and C8 carbons for oxidation, with a large additional cavity extending beyond the heme to accommodate the methyl termini of fatty acids beyond the site of cleavage. The structures explain the experimentally observed lack of stereo- and regiospecificity in the hydroxylation and cleavage of free fatty acids. The P450(BioI)-ACP complexes represent the only structurally characterized P450-carrier protein complexes to date, which has allowed the generation of a model of the interaction of the vancomycin biosynthetic P450 OxyB with its proposed carrier protein bound substrate.

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