3EFP image
Deposition Date 2008-09-09
Release Date 2009-04-07
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3EFP
Keywords:
Title:
Crystal structure of the Escherichia coli twin arginine leader peptide binding protein DmsD in a monomeric form
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Twin-arginine leader-binding protein dmsD
Gene (Uniprot):dmsD
Chain IDs:A, B
Chain Length:208
Number of Molecules:2
Biological Source:Escherichia coli
Primary Citation
Structural analysis of a monomeric form of the twin-arginine leader peptide binding chaperone Escherichia coli DmsD.
J.Mol.Biol. 389 124 133 (2009)
PMID: 19361518 DOI: 10.1016/j.jmb.2009.03.069

Abstact

The redox enzyme maturation proteins play an essential role in the proofreading and membrane targeting of protein substrates to the twin-arginine translocase. Functionally, the most thoroughly characterized redox enzyme maturation protein to date is Escherichia coli DmsD (EcDmsD). Herein, we present the X-ray crystal structure of the monomeric form of the EcDmsD refined to 2.0 A resolution, with clear electron density present for each of its 204 amino acid residues. The structural data presented here complement the biochemical data previously generated regarding the function of these twin-arginine translocase leader peptide binding chaperone proteins. Docking and molecular dynamics simulation experiments were used to provide a proposed model for how this chaperone is able to recognize the leader peptide of its substrate DmsA. The interactions observed in the model are in agreement with previous biochemical data and suggest intimate interactions between the conserved twin-arginine motif of the leader peptide of E. coli DmsA and the most conserved regions on the surface of EcDmsD.

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