3ECY image
Deposition Date 2008-09-02
Release Date 2008-10-07
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3ECY
Keywords:
Title:
Crystal structural analysis of Drosophila melanogaster dUTPase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.88 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CG4584-PA, isoform A (BcDNA.LD08534)
Gene (Uniprot):dUTPase
Chain IDs:A, B
Chain Length:160
Number of Molecules:2
Biological Source:Drosophila melanogaster
Primary Citation
Molecular shape and prominent role of beta-strand swapping in organization of dUTPase oligomers.
Febs Lett. 583 865 871 (2009)
PMID: 19302784 DOI: 10.1016/j.febslet.2009.02.011

Abstact

Most dUTP pyrophosphatases (dUTPases) are homotrimers with interfaces formed between subunit surfaces, in the central channel, and by C-terminal beta-strand swapping. Analysis of intersubunit interactions reveals an important cohesive role for the C-terminus. This is reflected in the crystal structure of fruitfly dUTPase displaying a dimeric organization in crystals grown in alcohol solution, where only beta-strand swapping interactions between subunits are retained from the usual trimer structure. Mutations of a suggested hinge proline destabilize human and Escherichia coli dUTPases without preventing trimeric organization. Trimer formation was, however, prevented in the human enzyme by truncating the C-terminus before the swapping arm. The molecular shape of full-length enzymes in solution reveals the localization and variation in flexibility of N- and C-terminal segments.

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Primary Citation of related structures