3EBE image
Deposition Date 2008-08-27
Release Date 2008-12-09
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3EBE
Keywords:
Title:
Crystal structure of xenopus laevis replication initiation factor MCM10 internal domain
Biological Source:
Source Organism:
Xenopus laevis (Taxon ID: 8355)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein MCM10 homolog
Gene (Uniprot):mcm10
Chain IDs:A, B, C
Chain Length:200
Number of Molecules:3
Biological Source:Xenopus laevis
Ligand Molecules
Primary Citation
Structural basis for DNA binding by replication initiator mcm10.
Structure 16 1892 1901 (2008)
PMID: 19081065 DOI: 10.1016/j.str.2008.10.005

Abstact

Mcm10 is an essential eukaryotic DNA replication protein required for assembly and progression of the replication fork. The highly conserved internal domain (Mcm10-ID) has been shown to physically interact with single-stranded (ss) DNA, DNA polymerase alpha, and proliferating cell nuclear antigen (PCNA). The crystal structure of Xenopus laevis Mcm10-ID presented here reveals a DNA binding architecture composed of an oligonucleotide/oligosaccharide-fold followed in tandem by a variant and highly basic zinc finger. NMR chemical shift perturbation and mutational studies of DNA binding activity in vitro reveal how Mcm10 uses this unique surface to engage ssDNA. Corresponding mutations in Saccharomyces cerevisiae result in increased sensitivity to replication stress, demonstrating the functional importance of DNA binding by this region of Mcm10 to replication. In addition, mapping Mcm10 mutations known to disrupt PCNA, polymerase alpha, and DNA interactions onto the crystal structure provides insight into how Mcm10 might coordinate protein and DNA binding within the replisome.

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Primary Citation of related structures