3EB6 image
Deposition Date 2008-08-27
Release Date 2008-09-09
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3EB6
Title:
Structure of the cIAP2 RING domain bound to UbcH5b
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Xenopus laevis (Taxon ID: 8355)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.32
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Baculoviral IAP repeat-containing protein 3
Gene (Uniprot):BIRC3
Chain IDs:A
Chain Length:74
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 D2
Gene (Uniprot):ube2d2
Chain IDs:B
Chain Length:149
Number of Molecules:1
Biological Source:Xenopus laevis
Ligand Molecules
Primary Citation
Structures of the cIAP2 RING Domain Reveal Conformational Changes Associated with Ubiquitin-conjugating Enzyme (E2) Recruitment.
J.Biol.Chem. 283 31633 31640 (2008)
PMID: 18784070 DOI: 10.1074/jbc.M804753200

Abstact

Inhibitor of apoptosis (IAP) proteins are key negative regulators of cell death that are highly expressed in many cancers. Cell death caused by antagonists that bind to IAP proteins is associated with their ubiquitylation and degradation. The RING domain at the C terminus of IAP proteins is pivotal. Here we report the crystal structures of the cIAP2 RING domain homodimer alone, and bound to the ubiquitin-conjugating (E2) enzyme UbcH5b. These structures show that small changes in the RING domain accompany E2 binding. By mutating residues at the E2-binding surface, we show that autoubiquitylation is required for regulation of IAP abundance. Dimer formation is also critical, and mutation of a single C-terminal residue abrogated dimer formation and E3 ligase activity was diminished. We further demonstrate that disruption of E2 binding, or dimerization, stabilizes IAP proteins against IAP antagonists in vivo.

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Primary Citation of related structures