3E7R image
Deposition Date 2008-08-18
Release Date 2009-06-09
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3E7R
Title:
X-ray Crystal Structure of Racemic Plectasin
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Resolution:
1.00 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P -1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Plectasin
Gene (Uniprot):DEF
Chain IDs:A (auth: L)
Chain Length:40
Number of Molecules:1
Biological Source:
Primary Citation
Racemic crystallography of synthetic protein enantiomers used to determine the X-ray structure of plectasin by direct methods
Protein Sci. 18 1146 1154 (2009)
PMID: 19472324 DOI: 10.1002/pro.127

Abstact

We describe the use of racemic crystallography to determine the X-ray structure of the natural product plectasin, a potent antimicrobial protein recently isolated from fungus. The protein enantiomers L-plectasin and D-plectasin were prepared by total chemical synthesis; interestingly, L-plectasin showed the expected antimicrobial activity, while D-plectasin was devoid of such activity. The mirror image proteins were then used for racemic crystallization. Synchrotron X-ray diffraction data were collected to atomic resolution from a racemic plectasin crystal; the racemate crystallized in the achiral centrosymmetric space group P1 with one L-plectasin molecule and one D-plectasin molecule forming the unit cell. Dimer-like intermolecular interactions between the protein enantiomers were observed, which may account for the observed extremely low solvent content (13%-15%) and more highly ordered nature of the racemic crystals. The structure of the plectasin molecule was well defined for all 40 amino acids and was generally similar to the previously determined NMR structure, suggesting minimal impact of the crystal packing on the plectasin conformation.

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