3E76 image
Entry Detail
PDB ID:
3E76
Keywords:
Title:
Crystal structure of Wild-type GroEL with bound Thallium ions
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-08-17
Release Date:
2009-08-25
Method Details:
Experimental Method:
Resolution:
3.94 Å
R-Value Free:
0.29
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:60 kDa chaperonin
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N
Chain Length:547
Number of Molecules:14
Biological Source:Escherichia coli UTI89
Primary Citation
Use of thallium to identify monovalent cation binding sites in GroEL.
Acta Crystallogr.,Sect.F 65 967 971 (2009)
PMID: 19851000 DOI: 10.1107/S1744309109032928

Abstact

GroEL is a bacterial chaperone protein that assembles into a homotetradecameric complex exhibiting D(7) symmetry and utilizes the co-chaperone protein GroES and ATP hydrolysis to assist in the proper folding of a variety of cytosolic proteins. GroEL utilizes two metal cofactors, Mg(2+) and K(+), to bind and hydrolyze ATP. A K(+)-binding site has been proposed to be located next to the nucleotide-binding site, but the available structural data do not firmly support this conclusion. Moreover, more than one functionally significant K(+)-binding site may exist within GroEL. Because K(+) has important and complex effects on GroEL activity and is involved in both positive (intra-ring) and negative (inter-ring) cooperativity for ATP hydrolysis, it is important to determine the exact location of these cation-binding site(s) within GroEL. In this study, the K(+) mimetic Tl(+) was incorporated into GroEL crystals, a moderately redundant 3.94 A resolution X-ray diffraction data set was collected from a single crystal and the strong anomalous scattering signal from the thallium ion was used to identify monovalent cation-binding sites. The results confirmed the previously proposed placement of K(+) next to the nucleotide-binding site and also identified additional binding sites that may be important for GroEL function and cooperativity. These findings also demonstrate the general usefulness of Tl(+) for the identification of monovalent cation-binding sites in protein crystal structures, even when the quality and resolution of the diffraction data are relatively low.

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