3E5J image
Entry Detail
PDB ID:
3E5J
Keywords:
Title:
Crystal structure of CYP105P1 wild-type ligand-free form
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2008-08-14
Release Date:
2008-12-30
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome P450 (Cytochrome P450 hydroxylase)
Mutations:M387I
Chain IDs:A
Chain Length:403
Number of Molecules:1
Biological Source:Streptomyces avermitilis
Ligand Molecules
Primary Citation
Crystal structures of cytochrome P450 105P1 from Streptomyces avermitilis: conformational flexibility and histidine ligation state
J.Bacteriol. 191 1211 1219 (2009)
PMID: 19074393 DOI: 10.1128/JB.01276-08

Abstact

The polyene macrolide antibiotic filipin is widely used as a probe for cholesterol in biological membranes. The filipin biosynthetic pathway of Streptomyces avermitilis contains two position-specific hydroxylases, C26-specific CYP105P1 and C1'-specific CYP105D6. In this study, we describe the three X-ray crystal structures of CYP105P1: the ligand-free wild-type (WT-free), 4-phenylimidazole-bound wild-type (WT-4PI), and ligand-free H72A mutant (H72A-free) forms. The BC loop region in the WT-free structure has a unique feature; the side chain of His72 within this region is ligated to the heme iron. On the other hand, this region is highly disordered and widely open in WT-4PI and H72A-free structures, respectively. Histidine ligation of wild-type CYP105P1 was not detectable in solution, and a type II spectral change was clearly observed when 4-phenylimidazole was titrated. The H72A mutant showed spectroscopic characteristics that were almost identical to those of the wild-type protein. In the H72A-free structure, there is a large pocket that is of the same size as the filipin molecule. The highly flexible feature of the BC loop region of CYP105P1 may be required to accept a large hydrophobic substrate.

Legend

Protein

Chemical

Disease

Primary Citation of related structures