3E3Q image
Deposition Date 2008-08-07
Release Date 2008-11-04
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3E3Q
Keywords:
Title:
Structure of the 3alpham13 high-affinity mutant of the 2C TCR in complex with Ld/QL9
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.95 Å
R-Value Free:
0.27
R-Value Work:
0.25
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, L-D alpha chain
Gene (Uniprot):H2-L
Mutations:F8Y, V12T, P15R, I23T, N30D, A49V, I66V, W97R, K131R
Chain IDs:A, E (auth: B), I (auth: c), M (auth: H), Q (auth: L), U (auth: P), Y (auth: U), CA (auth: Y)
Chain Length:175
Number of Molecules:8
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:T-cell receptor alpha chain V region PHDS58
Mutations:L43P, W82R, G99D F100P A101P S102P A103L
Chain IDs:C (auth: D), G (auth: C), K (auth: d), O (auth: I), S (auth: M), W (auth: R), AA (auth: V), EA (auth: Z)
Chain Length:109
Number of Molecules:8
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:TCR beta chain
Mutations:G17E, G42E, H47Y, I77T, L81S
Chain IDs:D (auth: E), H (auth: F), L (auth: e), P (auth: J), T (auth: N), X (auth: S), BA (auth: W), FA (auth: a)
Chain Length:175
Number of Molecules:8
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:QL9 peptide
Chain IDs:B (auth: Q), F (auth: G), J (auth: f), N (auth: K), R (auth: O), V (auth: T), Z (auth: X), DA (auth: b)
Chain Length:9
Number of Molecules:8
Biological Source:
Ligand Molecules
Primary Citation
Distinct CDR3 conformations in TCRs determine the level of cross-reactivity for diverse antigens, but not the docking orientation.
J.Immunol. 181 6255 6264 (2008)
PMID: 18941216

Abstact

T cells are known to cross-react with diverse peptide MHC Ags through their alphabeta TCR. To explore the basis of such cross-reactivity, we examined the 2C TCR that recognizes two structurally distinct ligands, SIY-K(b) and alloantigen QL9-L(d). In this study we characterized the cross-reactivity of several high-affinity 2C TCR variants that contained mutations only in the CDR3alpha loop. Two of the TCR lost their ability to cross-react with the reciprocal ligand (SIY-K(b)), whereas another TCR (m67) maintained reactivity with both ligands. Crystal structures of four of the TCRs in complex with QL9-L(d) showed that CDR1, CDR2, and CDR3beta conformations and docking orientations were remarkably similar. Although the CDR3alpha loop of TCR m67 conferred a 2000-fold higher affinity for SIY-K(b), the TCR maintained the same docking angle on QL9-L(d) as the 2C TCR. Thus, CDR3alpha dictated the affinity and level of cross-reactivity, yet it did so without affecting the conserved docking orientation.

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Primary Citation of related structures