3DZM image
Deposition Date 2008-07-30
Release Date 2008-12-23
Last Version Date 2024-11-13
Entry Detail
PDB ID:
3DZM
Title:
Crystal structure of a major outer membrane protein from Thermus thermophilus HB27
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hypothetical conserved protein
Gene (Uniprot):TT_C0834
Chain IDs:A, B, C
Chain Length:214
Number of Molecules:3
Biological Source:Thermus thermophilus
Primary Citation
Crystal structure of a major outer membrane protein from Thermus thermophilus HB27
J.Mol.Biol. 385 1445 1455 (2009)
PMID: 19101566 DOI: 10.1016/j.jmb.2008.12.003

Abstact

The thermophilic eubacterium Thermus thermophilus belongs to one of the oldest branches of evolution and has a multilayered cell envelope that differs from that of modern Gram-negative bacteria. Its outer membrane contains integral outer membrane proteins (OMPs), of which only a few are characterized. TtoA, a new beta-barrel OMP, was identified by searching the genome sequence of strain HB27 for the presence of a C-terminal signature sequence. The structure of TtoA was determined to a resolution of 2.8 A, representing the first crystal structure of an OMP from a thermophilic bacterium. TtoA consists of an eight-stranded beta-barrel with a large extracellular part to which a divalent cation is bound. A five-stranded extracellular beta-sheet protrudes out of the membrane-embedded transmembrane barrel and is stabilized by a disulfide bridge. The edge of this beta-sheet forms crystal contacts that could mimic interactions with other proteins. In modern Gram-negative bacteria, the C-terminal signature sequence of OMPs is required for binding to an Omp85 family protein as a prerequisite for its assembly. We present hints that a similar assembly pathway exists in T. thermophilus by an in vitro binding assay, where unfolded TtoA binds to the Thermus Omp85 family protein TtOmp85, while a mutant without the signature sequence does not.

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