3DY5 image
Deposition Date 2008-07-25
Release Date 2008-10-07
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3DY5
Title:
Allene oxide synthase 8R-lipoxygenase from Plexaura homomalla
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.51 Å
R-Value Free:
0.32
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Allene oxide synthase-lipoxygenase protein
Chain IDs:A, B (auth: C)
Chain Length:1066
Number of Molecules:2
Biological Source:Plexaura homomalla
Primary Citation
A covalent linker allows for membrane targeting of an oxylipin biosynthetic complex.
Biochemistry 47 10665 10676 (2008)
PMID: 18785758 DOI: 10.1021/bi800751p

Abstact

A naturally occurring bifunctional protein from Plexaura homomalla links sequential catalytic activities in an oxylipin biosynthetic pathway. The C-terminal lipoxygenase (LOX) portion of the molecule catalyzes the transformation of arachidonic acid (AA) to the corresponding 8 R-hydroperoxide, and the N-terminal allene oxide synthase (AOS) domain promotes the conversion of the hydroperoxide intermediate to the product allene oxide (AO). Small-angle X-ray scattering data indicate that in the absence of a covalent linkage the two catalytic domains that transform AA to AO associate to form a complex that recapitulates the structure of the bifunctional protein. The SAXS data also support a model for LOX and AOS domain orientation in the fusion protein inferred from a low-resolution crystal structure. However, results of membrane binding experiments indicate that covalent linkage of the domains is required for Ca (2+)-dependent membrane targeting of the sequential activities, despite the noncovalent domain association. Furthermore, membrane targeting is accompanied by a conformational change as monitored by specific proteolysis of the linker that joins the AOS and LOX domains. Our data are consistent with a model in which Ca (2+)-dependent membrane binding relieves the noncovalent interactions between the AOS and LOX domains and suggests that the C2-like domain of LOX mediates both protein-protein and protein-membrane interactions.

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Primary Citation of related structures