3DWL image
Deposition Date 2008-07-22
Release Date 2008-08-26
Last Version Date 2023-08-30
Entry Detail
PDB ID:
3DWL
Title:
Crystal Structure of Fission Yeast Arp2/3 Complex Lacking the Arp2 Subunit
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.78 Å
R-Value Free:
0.34
R-Value Work:
0.32
R-Value Observed:
0.32
Space Group:
P 42 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 3
Gene (Uniprot):act2
Chain IDs:A, G (auth: B)
Chain Length:427
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 1
Gene (Uniprot):arc1
Chain IDs:B (auth: C), H
Chain Length:377
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 2
Gene (Uniprot):arc2
Chain IDs:C (auth: D), I
Chain Length:317
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 3
Gene (Uniprot):arc3
Chain IDs:D (auth: E), J
Chain Length:174
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 4
Gene (Uniprot):arc4
Chain IDs:E (auth: F), K
Chain Length:168
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 5
Gene (Uniprot):arc5
Chain IDs:F (auth: G), L
Chain Length:152
Number of Molecules:2
Biological Source:Schizosaccharomyces pombe
Ligand Molecules
Primary Citation
Structure and biochemical properties of fission yeast arp2/3 complex lacking the arp2 subunit.
J.Biol.Chem. 283 26490 26498 (2008)
PMID: 18640983 DOI: 10.1074/jbc.M802607200

Abstact

Arp2/3 (actin-related protein 2/3) complex is a seven-subunit complex that nucleates branched actin filaments in response to cellular signals. Nucleation-promoting factors such as WASp/Scar family proteins activate the complex by facilitating the activating conformational change and recruiting the first actin monomer for the daughter branch. Here we address the role of the Arp2 subunit in the function of Arp2/3 complex by isolating a version of the complex lacking Arp2 (Arp2Delta Arp2/3 complex) from fission yeast. An x-ray crystal structure of the DeltaArp2 Arp2/3 complex showed that the rest of the complex is unperturbed by the loss of Arp2. However, the Arp2Delta Arp2/3 complex was inactive in actin nucleation assays, indicating that Arp2 is essential to form a branch. A fluorescence anisotropy assay showed that Arp2 does not contribute to the affinity of the complex for Wsp1-VCA, a Schizosaccharomyces pombe nucleation-promoting factor protein. Fluorescence resonance energy transfer experiments showed that the loss of Arp2 does not prevent VCA from recruiting an actin monomer to the complex. Truncation of the N terminus of ARPC5, the smallest subunit in the complex, increased the yield of Arp2Delta Arp2/3 complex during purification but did not compromise nucleation activity of the full Arp2/3 complex.

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Primary Citation of related structures