3DVI image
Deposition Date 2008-07-18
Release Date 2009-05-12
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3DVI
Keywords:
Title:
Crystal structure of kappa 1 amyloidogenic light chain variable domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.53 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Amyloidogenic light chain variable domain AL-103
Mutagens:N34I, D92H, Q100P, 95ProIns
Chain IDs:A
Chain Length:109
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural alterations within native amyloidogenic immunoglobulin light chains.
J.Mol.Biol. 389 199 210 (2009)
PMID: 19361523 DOI: 10.1016/j.jmb.2009.04.010

Abstact

Amyloid diseases are characterized by the misfolding of a precursor protein that leads to amyloid fibril formation. Despite the fact that there are different precursors, some commonalities in the misfolding mechanism are thought to exist. In light chain amyloidosis (AL), the immunoglobulin light chain forms amyloid fibrils that deposit in the extracellular space of vital organs. AL proteins are thermodynamically destabilized compared to non-amyloidogenic proteins and some studies have linked this instability to increased fibril formation rates. Here we present the crystal structures of two highly homologous AL proteins, AL-12 and AL-103. This structural study shows that these proteins retain the canonical germ line dimer interface. We highlight important structural alterations in two loops flanking the dimer interface and correlate these results with the somatic mutations present in AL-12 and AL-103. We suggest that these alterations are informative structural features that are likely contributing to protein instability that leads to conformational changes involved in the initial events of amyloid formation.

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Primary Citation of related structures