3DTU image
Deposition Date 2008-07-15
Release Date 2008-09-16
Last Version Date 2024-10-09
Entry Detail
PDB ID:
3DTU
Keywords:
Title:
Catalytic core subunits (I and II) of cytochrome c oxidase from Rhodobacter sphaeroides complexed with deoxycholic acid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 1
Gene (Uniprot):ctaD
Chain IDs:A, C
Chain Length:566
Number of Molecules:2
Biological Source:Rhodobacter sphaeroides
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 2
Gene (Uniprot):ctaC
Chain IDs:B, D
Chain Length:262
Number of Molecules:2
Biological Source:Rhodobacter sphaeroides
Primary Citation
A conserved steroid binding site in cytochrome C oxidase.
Biochemistry 47 9931 9933 (2008)
PMID: 18759498 DOI: 10.1021/bi8013483

Abstact

Micromolar concentrations of the bile salt deoxycholate are shown to rescue the activity of an inactive mutant, E101A, in the K proton pathway of Rhodobacter sphaeroides cytochrome c oxidase. A crystal structure of the wild-type enzyme reveals, as predicted, deoxycholate bound with its carboxyl group at the entrance of the K path. Since cholate is a known potent inhibitor of bovine oxidase and is seen in a similar position in the bovine structure, the crystallographically defined, conserved steroid binding site could reveal a regulatory site for steroids or structurally related molecules that act on the essential K proton path.

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Primary Citation of related structures
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